Derive protein domain presence/absence and counts via InterProScan and write to DuckDB

Source: R/data_processing.R

Derive protein domain presence/absence and counts via InterProScan and write to DuckDB

domainFromIPR(
  duckdb_path,
  path,
  out_file_base = "iprscan",
  appl = c("Pfam"),
  ipr_version = "5.76-107.0",
  ipr_dest_dir = "inst/extdata/interpro",
  ipr_platform = "linux/amd64",
  auto_prepare_data = TRUE,
  threads = 8,
  file_format = "TSV",
  docker_repo = "interpro/interproscan"
)