Fetch BV-BRC bacterial genome data

Source: R/data_curation.R

Run the BV-BRC CLI (p3-all-genomes) inside a Docker image and return results as a tibble.

.fetchBVBRCdata(image = "danylmb/bvbrc:5.3", verbose = TRUE)

Arguments

image

Character scalar. Docker image with BV-BRC CLI preinstalled. Defaults to "danylmb/bvbrc:5.3".

verbose

Logical. If TRUE, prints informative progress messages. Default: TRUE.

Value

A tibble with bacterial genome metadata (BV-BRC column names intact).