Background: Studying bacterial physiology, adaptation, and pathogenicity through the lens of evolution requires delineating the phylogenetic history of bacterial proteins and genomes. Moreover, delineating this history of proteins is best done at all …
This year useR! (https://user2021.r-project.org/) will be a global and entirely remote conference. One of the main goals is to encourage the participation of diverse people (considering diversity in all its forms and all its intersectionalities). The …
This workshop will present how to analyze & visualize processed genomics data.
This workshop will be divided in 5 parts:
Part 1: Getting started w/ readr
Part 2: Reshaping data w/ tidyr
Part 3: Data wrangling w/ dplyr
Part 4: Visualizing tidy data …
We will discuss the alpha version of their new easy-to-use interactive webapp: MolEvolvR, for characterizing proteins using molecular evolution and phylogeny. We will begin by demonstrating the power of MolEvolvR using the panbacterial stress response system, PSP (phage shock protein), as an example. Then, we will anyone can use this app to study their protein(s) of interest.
PSP app: jravilab.shinyapps.io/psp-evolution (bioRxiv 2020)
MolEvolvR app: jravilab.org/molevolvr (currently, alpha-version)