R

MolEvolvR BTS: When and how to build a web-app and software package?

We recently developed a web application, MolEvolvR, to characterize proteins using molecular evolution and phylogeny. This session will serve as a behind-the-scenes (BTS) sneak peek into what MolEvolvR does, how it does it, and its origin story. The …

Ten simple rules to host an inclusive conference

Conferences are spaces to meet and network within and across academic and technical fields, learn about new advances, and share our work. They can help define career paths and create long-lasting collaborations and opportunities. However, these …

Using Tidyverse for Genomics

This workshop presents how to analyze & visualize processed transcriptomic data. This workshop is divided in 5 parts: Part 1: Getting started w/ `readr` Part 2: Reshaping data w/ `tidyr` Part 3: Data wrangling w/ `dplyr` Part 4: Visualizing tidy …

MolEvolvR: a web-app for characterizing proteins using molecular evolution and phylogeny

Studying proteins through the lens of evolution can help identify conserved features and lineage-specific variants, and potentially, their functions. MolEvolvR (http://jravilab.org/molevolvr) is a web-app that enables researchers to run a …

How I teach Life Scientists to Build Inclusive Communities

Key “take home” points: 1. How to engage and bring together those underrepresented in STEAM? 2. What are useful formats to engage a diverse audience? 3. How to identify co-organizers, speakers, sources of funding?

Strategies to build a strong diverse AsiaR community

Incubator: Stop reinventing the wheel: R package(s) for conference and abstract management

The ability to host an entire conference online went from nice-to-have to absolutely essential for many communities within just a bit more than a year. As a consequence, online conference tools were exposed to a wider audience, faced tougher …

MolEvolvR: Web-app and R-package for characterizing proteins using molecular evolution and phylogeny

Molecular evolution and phylogeny can provide key insights into pathogenic protein families. Studying how these proteins evolve across bacterial lineages can help identify lineage-specific and pathogen-specific signatures and variants, and …

Incubator: Strategies to build a strong AsiaR community

R has been a very inclusive community and collective learning has always helped, with many users of R in Asian countries we can as well have a strongly knit community for R’s users. Inspired by the MENA (Middle East and North Africa) R, AfricaR, and …

Making cool publication quality tables w/ R