Molecular Evolution and Phylogeny • MolEvolvR

The MolEvolvR R-package provides a framework for characterizing proteins using molecular evolution and phylogeny. Check out our pkgdown page here: jravilab.github.io/MolEvolvR

Installation

You can install the development version of MolEvolvR from GitHub with:

# Install Bioconductor
if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install(version = "3.19")

# Install Development Version of MolEvolvR
BiocManager::install("JRaviLab/MolEvolvR")

Loading the package

library(MolEvolvR)

Example

This is a basic example which shows you how to analyze your favorite protein:

library(MolEvolvR)
## basic example code
## ⏳ Stay tuned!

Companion repos & projects

MolEvolvR web-app 1.0 | 🔒Repo | Live web-app | Preprint | Case studies
MolEvolvR web-app 2.0 | 🔒Repo

Specific use cases

PSP evolution across the tree of life | 🔒Repo | Live web-app | PubMed
Bacterial phage defense system, avcDI | Repo | PubMed
DciA evolution across bacteria | Repo | PubMed
Internalins in Listeria | Repo | PubMed

Current contributors

David Mayer | R-package, back-end
Faisal Alquaddoomi | Front-end 1.0, back-end
Evan Brenner | MolEvolvR functionality
Vince Rubinetti | Front-end 2.0
Dave Bunten | Data management, engineering
Janani Ravi | PI

Contribution guidelines

We welcome contributions from the community! To ensure a smooth and collaborative process, please follow these guidelines. Outreachy interns, please check out these pointers to get started.

📜 License

Code of Conduct

Please note that the MolEvolvR project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

MolEvolvR 📦