addName

This function adds a new 'Name' column that is comprised of components from Kingdom, Phylum, Genus, and species, as well as the accession

This function adds a new 'Name' column that is comprised of components from Kingdom, Phylum, Genus, and species, as well as the accession

Usage

addName(
  data,
  accnum_col = "AccNum",
  spec_col = "Species",
  lin_col = "Lineage",
  lin_sep = ">",
  out_col = "Name"
)

addName(
  data,
  accnum_col = "AccNum",
  spec_col = "Species",
  lin_col = "Lineage",
  lin_sep = ">",
  out_col = "Name"
)

Arguments

data

Data to add name column to

accnum_col

Column containing accession numbers

spec_col

Column containing species

lin_col

Column containing lineage

lin_sep

Character separating lineage levels

out_col

Column that contains the new 'Name' derived from Species, Lineage, and AccNum info

Value

Original data with a 'Name' column

Original data with a 'Name' column

Author

Samuel Chen, Janani Ravi

Examples

# Example usage of the addName function
data <- data.frame(
  AccNum = c("ACC123", "ACC456"),
  Species = c("Homo sapiens", "Mus musculus"),
  Lineage = c("Eukaryota>Chordata", "Eukaryota>Chordata")
)
enriched_data <- addName(data)
enriched_data
#>   AccNum      Species            Lineage                     Name
#> 1 ACC123 Homo sapiens Eukaryota>Chordata  EChorda_Hsapiens_ACC123
#> 2 ACC456 Mus musculus Eukaryota>Chordata EChorda_Mmusculus_ACC456
if (FALSE) { # \dontrun{
addName(data_frame)
} # }