convertFA2Tree
Usage
convertFA2Tree(
fa_path = here("data/alns/pspa_snf7.fa"),
tre_path = here("data/alns/pspa_snf7.tre"),
fasttree_path = here("src/FastTree")
)Arguments
- fa_path
Path to the input FASTA alignment file (.fa). Default is the path to "data/alns/pspa_snf7.fa".
- tre_path
Path to the output file where the generated tree (.tre) will be saved. Default is the path to "data/alns/pspa_snf7.tre".
- fasttree_path
Path to the FastTree executable, which is used to generate the phylogenetic tree. Default is "src/FastTree".