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Function to generate MSA using kalign

Usage

createMSA_Kalign(fa_file = "", outfile = "")

Arguments

fa_file

Character. The path to the input FASTA file containing protein sequences.

outfile

Character. The path to the output file where the alignment will be saved.

Value

A list containing the alignment object and the output file path.

Examples

if (FALSE) { # \dontrun{
createMSA_Kalign(fa_file = "path/to/sequences.fasta", 
                 outfile = "path/to/alignment.txt")
} # }