Wordclouds for the predominant domains, domain architectures.

Wordclouds for the predominant domains (from DAs) and DAs (from GC)

Usage

createWordCloud2Element(
  query_data = "prot",
  colname = "DomArch",
  cutoff = 70,
  UsingRowsCutoff = FALSE
)

Arguments

query_data

Data frame of protein homologs with the usual 11 columns + additional word columns (0/1 format). Default is "prot".

colname

Character. The name of the column in query_data to generate the word cloud from. Default is "DomArch".

cutoff

Numeric. The cutoff value for filtering elements based on their frequency. Default is 70.

UsingRowsCutoff

Logical. Whether to use a row-based cutoff instead of a frequency cutoff. Default is FALSE.

Value

A word cloud plot showing the frequency of elements from the selected column.

Details

For "da2doms" you would need the file DA.doms.wc as well as the column query_data$DomArch.norep

For "gc2da", you would need the file GC.DA.wc as well as the column query_data$GenContext.norep

Note

Please refer to the source code if you have alternate file formats and/or column names.

Author

Janani Ravi

Examples

if (FALSE) { # \dontrun{
createWordCloudElement(prot, "da2doms", 10)
} # }