Download the combined assembly summaries of genbank and refseq

Download the combined assembly summaries of genbank and refseq

Usage

downloadAssemblySummary(
  outpath,
  keep = c("assembly_accession", "taxid", "species_taxid", "organism_name")
)

Arguments

outpath

String of path where the assembly summary file should be written

keep

Character vector containing which columns should be retained and downloaded

Value

A tab-separated file containing the assembly summary. The function does notreturn any value but writes the output directly to the specified file.

Author

Samuel Chen, Janani Ravi

Examples

if (FALSE) { # \dontrun{
downloadAssemblySummary(outpath = "assembly_summary.tsv",
     keep = c("assembly_accession", "taxid", "organism_name"))
} # }