filterByDomains

filterByDomains filters a data frame by identifying exact domain matches and either keeping or removing rows with the identified domain

Usage

filterByDomains(
  prot,
  column = "DomArch",
  doms_keep = c(),
  doms_remove = c(),
  ignore.case = FALSE
)

Arguments

prot

Dataframe to filter

column

Column to search for domains in (DomArch column)

doms_keep

Vector of domains that must be identified within column in order for observation to be kept

doms_remove

Vector of domains that, if found within an observation, will be removed

ignore.case

Should the matching be non case sensitive

Value

Filtered data frame

Note

There is no need to make the domains 'regex safe', that will be handled by this function

Author

Samuel Chen, Janani Ravi

Examples

if (FALSE) { # \dontrun{
filterByDomains()
} # }