getTopAccByLinDomArch

Group by lineage + DA then take top 20

Usage

getTopAccByLinDomArch(
  infile_full,
  DA_col = "DomArch.Pfam",
  lin_col = "Lineage_short",
  n = 20,
  query
)

Arguments

infile_full

A data frame containing the full dataset with lineage and domain architecture information.

DA_col

A string representing the name of the domain architecture column. Default is "DomArch.Pfam".

lin_col

A string representing the name of the lineage column. Default is "Lineage_short".

n

An integer specifying the number of top accession numbers to return. Default is 20.

query

A string for filtering a specific query name. If it is not "All", only the data matching this query will be processed.

Value

A vector of the top N accession numbers (AccNum) based on counts grouped by lineage and domain architecture.

Examples

if (FALSE) { # \dontrun{
top_accessions <- getTopAccByLinDomArch(infile_full = my_data,
DA_col = "DomArch.Pfam", lin_col = "Lineage_short",
n = 20, query = "specific_query_name")
} # }