Lineage Plot: Heatmap of Queries vs Lineages — lineage.Query.plot • MolEvolvR

Lineage plot for queries. Heatmap.

Usage

lineage.Query.plot(
  query_data = all,
  queries,
  colname = "ClustName",
  cutoff,
  color = "default"
)

Arguments

query_data: Data frame of protein homologs with the usual 11 columns + additional word columns (0/1 format). Default is prot (variable w/ protein data).
queries: Character Vector containing the queries that will be used for the categories
color

Note

Please refer to the source code if you have alternate file formats and/or column names.

Examples

if (FALSE) { # \dontrun{
lineage.Query.plot(prot, c("PspA", "PspB", "PspC", "PspM", "PspN"), 95)
} # }