Multiple Sequence Alignment — msa

Generates a multiple sequence alignment from a fasta file

msa_pdf is a function that reads a fasta file and generates a multiple sequence alignment as a pdf

Usage

msa_pdf(fasta_path, out_path = NULL, lowerbound = NULL, upperbound = NULL)

fasta_path: Character. The path location of the fasta file to be read.
out_path: Character. The path location of the output pdf to write. Default is NULL. If value is NULL, the pdf is written to the same directory as the fasta file.
lowerbound: Numeric. The column that determines the starting location of the MSA. Default is NULL. If value is NULL, the entire multiple sequence alignment is printed.
upperbound: Numeric. The column that determines the ending location of the MSA. Default is NULL. If value is NULL, the entire multiple sequence alignment is printed.

if (FALSE) { # \dontrun{
msa_pdf()
} # }