plotIPR2VizWeb — plotIPR2VizWeb • MolEvolvR

plotIPR2VizWeb

Usage

plotIPR2VizWeb(
  infile_ipr,
  accessions,
  analysis = c("Pfam", "Phobius", "TMHMM", "Gene3D"),
  group_by = "Analysis",
  name = "Name",
  text_size = 15,
  legend_name = "ShortName",
  cols = 5,
  rows = 10
)

Arguments

infile_ipr: A path to the input IPR file (TSV format) containing domain information.
accessions: A character vector of accession numbers to filter the analysis.
analysis: A character vector specifying the types of analysis to include (e.g., "Pfam", "Phobius", "TMHMM", "Gene3D"). Default is a vector of these analyses.
group_by: A string specifying how to group the visualization. Default is "Analysis". Options include "Analysis" or "Query".
name: A string representing the name to use for y-axis labels. Default is "Name".
text_size: An integer specifying the text size for the plot. Default is 15.
legend_name: A string representing the column to use for legend labels. Default is "ShortName".
cols: An integer specifying the number of columns in the facet wrap. Default is 5.
rows: An integer specifying the number of rows in the legend. Default is 10.

Value

A ggplot object representing the domain architecture visualization for web display.

Examples

if (FALSE) { # \dontrun{
plot <- plotIPR2VizWeb(infile_ipr = "path/to/ipr_file.tsv",
                       accessions = c("ACC123", "ACC456"),
                       analysis = c("Pfam", "TMHMM"),
                       group_by = "Analysis",
                       name = "Gene Name",
                       text_size = 15,
                       legend_name = "ShortName",
                       cols = 5,
                       rows = 10)
plot
} # }