proteinAcc2TaxID_old

Perform elink to go from protein database to taxonomy database and write the resulting file of taxid and lineage to out_path

Usage

proteinAcc2TaxID_old(accessions, out_path, plan = "multicore")

Arguments

accessions

A character vector containing the accession numbers to query in the protein database.

out_path

A string specifying the path where the results of the query will be written. If set to NULL, a temporary directory will be used.

plan

A character string that specifies the execution plan for parallel processing. The default is "multicore".

Value

This function does not return a value. It writes the results to the specified output path.

Author

Samuel Chen, Janani Ravi

Examples

if (FALSE) { # \dontrun{
accessions <- c("ABC123", "XYZ456", "LMN789")
proteinAcc2TaxID_old(accessions, out_path = "/path/to/output")
} # }