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Rename the labels of fasta files

Usage

renameFA(fa_path, outpath, replacement_function = mapAcc2Name, ...)

Arguments

fa_path

Path to fasta file

outpath

Path to write altered fasta file to

replacement_function

Function to apply to lines starting with '>'

...

Additional arguments to pass to replacement_function

Value

A character vector of the modified lines in the FASTA file.

Examples

if (FALSE) { # \dontrun{
renameFA("path/to/input.fasta",
"path/to/output.fasta", mapAcc2Name, acc2name)
} # }