Rename the labels of fasta files
Usage
rename_fasta(fa_path, outpath, replacement_function = map_acc2name, ...)
Arguments
- fa_path
Path to fasta file
- outpath
Path to write altered fasta file to
- replacement_function
Function to apply to lines starting with '>'
- ...
Additional arguments to pass to replacement_function
Value
Character vector containing the modified lines of the Fasta file.
Examples
if (FALSE) { # \dontrun{
rename_fasta("input.fasta", "output.fasta",
replacement_function = map_acc2name, acc2name = acc2name_table)
} # }