repeat2s

Condense repeated domains

Condenses repeated domains in the specified column.

This function identifies repeated domains and condenses them to (s). ?? Certain domains can be removed according to an additional data frame. The original data frame is returned with the corresponding cleaned up column.

Usage

repeat2s(prot, by_column = "DomArch", excluded_prots = c())

Arguments

prot

A data frame containing 'DomArch', 'GenContext', 'ClustName' columns.

by_column

Column in which repeats are condensed to domain+domain -> domain(s).

excluded_prots

Vector of strings that repeat2s should not reduce to (s). Defaults to c()

Value

Describe return, in detail

Examples

if (FALSE) { # \dontrun{
repeat2s(prot, "DomArch")
} # }