runIPRScan

Run InterProScan on a given FASTA file and save the results to an output file.

Usage

runIPRScan(filepath_fasta, filepath_out, appl = c("Pfam", "Gene3D"))

Arguments

filepath_fasta

A string representing the path to the input FASTA file.

filepath_out

A string representing the base path for the output file.

appl

A character vector specifying the InterProScan applications to use (e.g., "Pfam", "Gene3D"). Default is c("Pfam", "Gene3D").

Value

A data frame containing the results from the InterProScan output TSV file.

Examples

if (FALSE) { # \dontrun{
results <- runIPRScan(
    filepath_fasta = "path/to/your_fasta_file.fasta",
    filepath_out = "path/to/output_file",
    appl = c("Pfam", "Gene3D")
)
results
} # }