writeMSA_AA2FA

MsaAAMultipleAlignment Objects are generated from calls to msaClustalOmega and msaMuscle from the 'msa' package

Write MsaAAMultpleAlignment Objects as aligned fasta sequence MsaAAMultipleAlignment Objects are generated from calls to msaClustalOmega and msaMuscle from the 'msa' package

Usage

writeMSA_AA2FA(alignment, outpath)

writeMSA_AA2FA(alignment, outpath)

Arguments

alignment

MsaAAMultipleAlignment object to be written as a fasta

outpath

Where the resulting FASTA file should be written to

Value

Character string representing the content of the written FASTA file.

Character string of the FASTA content that was written to the file.

Author

Samuel Chen, Janani Ravi

Examples

if (FALSE) { # \dontrun{
writeMSA_AA2FA("my_sequences.fasta", outpath = "aligned_output.fasta")
} # }
if (FALSE) { # \dontrun{
# Example usage
alignment <- alignFasta("path/to/sequences.fasta")
writeMSA_AA2FA(alignment, "path/to/aligned_sequences.fasta")
} # }