Plot a Confusion Matrix Heatmap

Source: R/plot_ml.R

Produces a heatmap visualization of the confusion matrix for AMR predictions.

plotCM(test_data_plus_predictions)

Arguments

test_data_plus_predictions

A tibble containing true and predicted phenotype labels (e.g. the output of predictML()), or a path to a TSV file containing the same.

Value

A heatmap (ggplot2 object) showing the confusion matrix.

Examples

data(demo_fit)
data(demo_ml_tibble)
preds <- predictML(demo_fit, demo_ml_tibble)
plotCM(preds)