runFishers(
matrix_path,
Q = 0.05,
alternative = "two.sided",
susceptible_label = "Susceptible",
resistant_label = "Resistant"
)
Arguments
- matrix_path
Path to the long sparse Parquet matrices
- Q
FDR cutoff for Benjamini Hochberg correction (default = 0.05)
- alternative
Type of Fisher test: "two.sided", "greater", or "less"
- susceptible_label
"Susceptible" phenotype label in the data
- resistant_label
"Resistant" phenotype label in the data
Value
The Fisher test results, BH correction, and feature frequencies