Randomly shuffles the AMR phenotype labels in the ML-ready tibble.

shuffleLabels(ml_input_tibble, seed = 5280)

Arguments

ml_input_tibble

An ML-ready tibble generated by loadMLInputTibble(). This must have a target variable column named either genome_drug.resistant_phenotype ("Resistant" or "Susceptible " classification for one bug/drug combination) or resistant_classes (multi-class classification for determining the drug classes to which each genome is resistant), but not both.

seed

pillar::num For reproducible analysis

Value

Pangenome with randomly shuffled AMR phenotype labels