Last updated: 2026-10-09
Checks: 6 1
Knit directory: b2ai_survey/
This reproducible R Markdown analysis was created with workflowr (version 1.7.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
The global environment had objects present when the code in the R Markdown file was run. These objects can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment. Use wflow_publish or wflow_build to ensure that the code is always run in an empty environment.
The following objects were defined in the global environment when these results were created:
| Name | Class | Size |
|---|---|---|
| b2ai_data | tbl_df;tbl;data.frame | 397.5 Kb |
| bridging_participants | tbl_df;tbl;data.frame | 5.5 Kb |
| bridging_summary | tbl_df;tbl;data.frame | 1.5 Kb |
| career_by_dgp | grouped_df;tbl_df;tbl;data.frame | 4.8 Kb |
| career_simple_summary | tbl_df;tbl;data.frame | 1.4 Kb |
| career_summary | tbl_df;tbl;data.frame | 1.7 Kb |
| career_temporal | grouped_df;tbl_df;tbl;data.frame | 7.8 Kb |
| classifyInstitutionType | function | 35.7 Kb |
| completeness | tbl_df;tbl;data.frame | 1.8 Kb |
| concentration_metrics | tbl_df;tbl;data.frame | 1.9 Kb |
| core_colors | character | 984 bytes |
| core_participation | tbl_df;tbl;data.frame | 1.5 Kb |
| core_summary | tbl_df;tbl;data.frame | 1.4 Kb |
| country_counts | tbl_df;tbl;data.frame | 1.5 Kb |
| cross_inst_potential | tbl_df;tbl;data.frame | 2.2 Kb |
| data_path | character | 232 bytes |
| degree_counts | tbl_df;tbl;data.frame | 2.9 Kb |
| degree_data | tbl_df;tbl;data.frame | 56.4 Kb |
| dgp_colors | character | 992 bytes |
| dgp_diversity_long | tbl_df;tbl;data.frame | 1.9 Kb |
| dgp_growth | tbl_df;tbl;data.frame | 3.4 Kb |
| dgp_inst_diversity | tbl_df;tbl;data.frame | 2.2 Kb |
| dgp_participation | tbl_df;tbl;data.frame | 1.5 Kb |
| dgp_summary | tbl_df;tbl;data.frame | 1.2 Kb |
| dgp_temporal | tbl_df;tbl;data.frame | 3.7 Kb |
| expertise_by_dgp | tbl_df;tbl;data.frame | 2 Kb |
| expertise_career | tbl_df;tbl;data.frame | 3 Kb |
| expertise_counts | tbl_df;tbl;data.frame | 5.1 Kb |
| expertise_data | tbl_df;tbl;data.frame | 160.9 Kb |
| expertise_span | tbl_df;tbl;data.frame | 6.3 Kb |
| expertise_span_top | tbl_df;tbl;data.frame | 3.3 Kb |
| inferCareerStage | function | 54.3 Kb |
| inst_counts | tbl_df;tbl;data.frame | 12.2 Kb |
| inst_counts_anon | tbl_df;tbl;data.frame | 10.7 Kb |
| inst_type_ranked | tbl_df;tbl;data.frame | 8.7 Kb |
| inst_type_summary | tbl_df;tbl;data.frame | 1.6 Kb |
| institution_mapping | tbl_df;tbl;data.frame | 23 Kb |
| interdisciplinary_idx | tbl_df;tbl;data.frame | 2.7 Kb |
| overlap_data | tbl_df;tbl;data.frame | 1.4 Kb |
| p_map | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 7.8 Mb |
| p1 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 1.3 Mb |
| p10 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 355.5 Kb |
| p11 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 355.1 Kb |
| p12 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 863.3 Kb |
| p13 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 354.9 Kb |
| p14 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 863.8 Kb |
| p15 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 355.6 Kb |
| p16 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 355.6 Kb |
| p17 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 6.8 Mb |
| p18 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 358.3 Kb |
| p19 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 355.1 Kb |
| p2 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 356.9 Kb |
| p20 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 356.5 Kb |
| p21 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 863.4 Kb |
| p22 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 354.9 Kb |
| p3 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 357.1 Kb |
| p4 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 361.3 Kb |
| p5 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 361.3 Kb |
| p6 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 354.9 Kb |
| p7 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 865.4 Kb |
| p8 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 865.1 Kb |
| p9 | ggplot2::ggplot;ggplot;ggplot2::gg;S7_object;gg | 869.6 Kb |
| raw_data | spec_tbl_df;tbl_df;tbl;data.frame | 257.3 Kb |
| sr_trainee_dgp | tbl_df;tbl;data.frame | 2.3 Kb |
| sr_trainee_long | tbl_df;tbl;data.frame | 1.9 Kb |
| state_counts | tbl_df;tbl;data.frame | 3.7 Kb |
| state_name_to_code | tbl_df;tbl;data.frame | 7.5 Kb |
| summary_metrics | tbl_df;tbl;data.frame | 3.1 Kb |
| summary_stats | tbl_df;tbl;data.frame | 2.1 Kb |
| temporal_data | tbl_df;tbl;data.frame | 2.1 Kb |
| top_degrees | tbl_df;tbl;data.frame | 1.8 Kb |
| top_expertise | tbl_df;tbl;data.frame | 2.7 Kb |
| top_insts | tbl_df;tbl;data.frame | 4 Kb |
| top_insts_anon | tbl_df;tbl;data.frame | 3.7 Kb |
| top10_pct | numeric | 56 bytes |
| top20_pct | numeric | 56 bytes |
| top5_pct | numeric | 56 bytes |
| total_participants | integer | 56 bytes |
| us_data | tbl_df;tbl;data.frame | 109.1 Kb |
| us_map_data | data.frame | 980.5 Kb |
The command set.seed(20201118) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.
Great job! Recording the operating system, R version, and package versions is critical for reproducibility.
Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.
Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version 95420e1. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
Ignored files:
Ignored: data/raw/
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were made to the R Markdown (analysis/questions.rmd) and HTML (docs/questions.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.
| File | Version | Author | Date | Message |
|---|---|---|---|---|
| html | 609d00d | Janani Ravi | 2025-11-20 | Update analysis docs and site, improve onboarding |
| Rmd | 81a7e33 | Janani Ravi | 2025-11-05 | add onboarding analysis, workflowr |
This document provides a comprehensive analysis of Bridge2AI (B2AI) consortium onboarding data, examining team composition, temporal evolution, institutional diversity, and participation patterns across data generation projects (DGPs) and cores. The analysis focuses on understanding the structure and dynamics of this large-scale team science initiative.
Temporal scope: any aspects that may have temporally evolved.
Career stage classification: still trying to get the best columns for this – but want to gauge their career stage – Trainee/postdoc, early-career (assistant prof), mid-career (associate prof), senior (full prof)? Or based on years since terminal degree?
Success metrics: are we evaluating “successful collaborations” – what are metrics/proxies to consider?
Success metrics: What specific outcomes define “successful collaboration” in B2AI? Are there milestone completion data, deliverable tracking, or quality metrics already being collected? (in addition to our milestone doc)
Career stage refinement: Do we have access to more detailed career information (academic ranks, years of experience) to improve career stage classification?
Longitudinal tracking: Are there plans to track participants over time (tall ask?)? Understanding who stays engaged vs. who leaves would be valuable.
Publication/output data: Maybe we can publication records, GitHub contributions, or dataset generation be linked to this onboarding data? (w/ Sean, Casey’s work?)
Network data: Are there communication logs (email, Slack), meeting attendance, or other interaction data that could reveal actual collaboration patterns?
Survey integration: Maybe link team science evaluation surveys be linked to this onboarding data for richer analysis?
Specific hypotheses: For the commentary paper, what specific team composition questions are most relevant? E.g.:
Privacy considerations: For publication, should all institution names be anonymized, or is it acceptable to identify top contributors?
sessionInfo()
R version 4.5.1 (2025-06-13)
Platform: aarch64-apple-darwin20
Running under: macOS Tahoe 26.6.2
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.1
locale:
[1] C.UTF-8/C.UTF-8/C.UTF-8/C/C.UTF-8/C.UTF-8
time zone: America/Denver
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] kableExtra_1.4.0 knitr_1.51 viridis_0.6.5 viridisLite_0.4.3
[5] ggridges_0.5.7 patchwork_1.3.1 scales_1.4.0 here_1.0.2
[9] lubridate_1.9.5 forcats_1.0.0 stringr_1.6.0 dplyr_1.2.1
[13] purrr_1.2.1 readr_2.2.0 tidyr_1.3.2 tibble_3.3.1
[17] ggplot2_4.0.2 tidyverse_2.0.0
loaded via a namespace (and not attached):
[1] gtable_0.3.6 xfun_0.57 bslib_0.10.0 tzdb_0.5.0
[5] vctrs_0.7.2 tools_4.5.1 generics_0.1.4 parallel_4.5.1
[9] pkgconfig_2.0.3 RColorBrewer_1.1-3 S7_0.2.1 lifecycle_1.0.5
[13] compiler_4.5.1 farver_2.1.2 git2r_0.36.2 textshaping_1.0.1
[17] httpuv_1.6.17 maps_3.4.3 htmltools_0.5.9 sass_0.4.10
[21] yaml_2.3.12 crayon_1.5.3 later_1.4.8 pillar_1.11.1
[25] jquerylib_0.1.4 whisker_0.4.1 cachem_1.1.0 tidyselect_1.2.1
[29] digest_0.6.39 stringi_1.8.7 labeling_0.4.3 rprojroot_2.1.1
[33] fastmap_1.2.0 grid_4.5.1 cli_3.6.5 magrittr_2.0.5
[37] withr_3.0.2 promises_1.5.0 bit64_4.6.0-1 timechange_0.4.0
[41] rmarkdown_2.31 bit_4.6.0 otel_0.2.0 gridExtra_2.3
[45] workflowr_1.7.2 hms_1.1.4 evaluate_1.0.5 rlang_1.2.0
[49] Rcpp_1.1.1 glue_1.8.0 xml2_1.5.2 svglite_2.2.2
[53] rstudioapi_0.17.1 vroom_1.7.1 jsonlite_2.0.0 R6_2.6.1
[57] systemfonts_1.3.2 fs_2.0.1